Package: phylopath 1.3.0

phylopath: Perform Phylogenetic Path Analysis

A comprehensive and easy to use R implementation of confirmatory phylogenetic path analysis as described by Von Hardenberg and Gonzalez-Voyer (2012) <doi:10.1111/j.1558-5646.2012.01790.x>.

Authors:Wouter van der Bijl [aut, cre]

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phylopath.pdf |phylopath.html✨
phylopath/json (API)
NEWS

# Install 'phylopath' in R:
install.packages('phylopath', repos = c('https://ax3man.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ax3man/phylopath/issues

Pkgdown site:https://ax3man.github.io

Datasets:

On CRAN:

Conda:

analysiscomparative-methodspathphylogenetics

8.00 score 13 stars 1 packages 81 scripts 854 downloads 8 mentions 11 exports 67 dependencies

Last updated 6 months agofrom:c74ea8a2a2. Checks:4 OK, 3 NOTE, 2 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 21 2025
R-4.5-winNOTEMar 21 2025
R-4.5-macNOTEMar 21 2025
R-4.5-linuxNOTEMar 21 2025
R-4.4-winOKMar 21 2025
R-4.4-macOKMar 21 2025
R-4.4-linuxOKMar 21 2025
R-4.3-winERRORMar 21 2025
R-4.3-macERRORMar 21 2025

Exports:averageaverage_DAGsbestchoicecoef_plotDAGdefine_model_setest_DAGphylo_pathplot_model_setshow_warnings

Dependencies:apeBiocGenericsBiocManagercachemclicodetoolscolorspacecpp11digestdplyrfansifarverfastmapfuturefuture.applygenericsggforceggmggplot2ggraphggrepelglobalsgluegraphgraphlayoutsgridExtragtableigraphisobandjsonlitelabelinglatticelifecyclelistenvmagrittrMASSMatrixmemoisemgcvmunsellnlmeparallellyphylolmpillarpkgconfigpolyclippurrrR6RColorBrewerRcppRcppArmadilloRcppEigenrlangscalesstringistringrsystemfontstibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithr

Comparing causal models of binary traits using phylopath

Wouter van der Bijl

Rendered frombinary_models.Rmdusingknitr::rmarkdownon Mar 21 2025.

Last update: 2023-10-09
Started: 2017-07-06

Introduction to phylogenetic path analysis with phylopath

Wouter van der Bijl

Rendered fromintro_to_phylopath.Rmdusingknitr::rmarkdownon Mar 21 2025.

Last update: 2023-10-09
Started: 2016-08-09