Package: phylopath 1.3.0
phylopath: Perform Phylogenetic Path Analysis
A comprehensive and easy to use R implementation of confirmatory phylogenetic path analysis as described by Von Hardenberg and Gonzalez-Voyer (2012) <doi:10.1111/j.1558-5646.2012.01790.x>.
Authors:
phylopath_1.3.0.tar.gz
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phylopath_1.3.0.tgz(r-4.4-any)phylopath_1.3.0.tgz(r-4.3-any)
phylopath_1.3.0.tar.gz(r-4.5-noble)phylopath_1.3.0.tar.gz(r-4.4-noble)
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phylopath.pdf |phylopath.html✨
phylopath/json (API)
NEWS
| # Install 'phylopath' in R: |
| install.packages('phylopath', repos = c('https://ax3man.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ax3man/phylopath/issues
- cichlids - Cichlid traits and the evolution of cooperative breeding.
- cichlids_tree - Cichlid phylogeny.
- red_list - Data on brain size, life history and vulnerability to extinction
- red_list_tree - Mammalian phylogeny
- rhino - Rhinogrades traits.
- rhino_tree - Rhinogrades phylogeny.
analysiscomparative-methodspathphylogenetics
Last updated 3 months agofrom:25e3f8de46. Checks:OK: 5 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 09 2024 |
| R-4.5-win | NOTE | Sep 09 2024 |
| R-4.5-linux | NOTE | Sep 09 2024 |
| R-4.4-win | OK | Sep 09 2024 |
| R-4.4-mac | OK | Sep 09 2024 |
| R-4.3-win | OK | Sep 09 2024 |
| R-4.3-mac | OK | Sep 09 2024 |
Exports:averageaverage_DAGsbestchoicecoef_plotDAGdefine_model_setest_DAGphylo_pathplot_model_setshow_warnings
Dependencies:apeBiocGenericsBiocManagercachemclicodetoolscolorspacecpp11digestdplyrfansifarverfastmapfuturefuture.applygenericsggforceggmggplot2ggraphggrepelglobalsgluegraphgraphlayoutsgridExtragtableigraphisobandlabelinglatticelifecyclelistenvmagrittrMASSMatrixmemoisemgcvmunsellnlmeparallellyphylolmpillarpkgconfigpolyclippurrrR6RColorBrewerRcppRcppArmadilloRcppEigenrlangscalesstringistringrsystemfontstibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithr
Comparing causal models of binary traits using phylopath
Rendered frombinary_models.Rmdusingknitr::rmarkdownon Sep 09 2024.Last update: 2023-10-09
Started: 2017-07-06
Introduction to phylogenetic path analysis with phylopath
Rendered fromintro_to_phylopath.Rmdusingknitr::rmarkdownon Sep 09 2024.Last update: 2023-10-09
Started: 2016-08-09
